species:   Rhsol
pid:       PID0527
parent:    Rhi-milR-82
paralog:   
locus:     KB317714.1:419185-419266
matures:   ['GGGAUACCUGUAUGAAUUGG', 'GAUUGGGCAAUCCCAG']
srr:       SRR1994877
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994877.cram KB317714.1:419185-419266

1 out of bounds
4 alignments
4 proper strand
4 stranded perfect matches

       ***************************                  ***********************       
UUCCAUUCGUGGGAUACCUGUAUGAAUUGGCGGAAAGGCUUUCAGAGGCCAAGCCAGCCGAUUGGGCAAUCCCAGACCCAAA
......((.((((((...(((.(.(((((((((...(((((....)))))...)).))))))).))))))))))))......
----------GGGAUACCUGUAUGAAUUGG---------------------------------------------------- l=20 a=0 c
-----------------------------------------------------------GAUUGGGCAAUCCCAG------- l=16 a=0 c*
---------UGGGAUACCUGUAUGAAUUGGCGGA------------------------------------------------ l=25 a=1 ma
------------------------------------------------------CAGCCGAUUGGGCAAUCCCAG------- l=21 a=0 ma*

-------------AUACCUGUAUGAAUUGGCGGA------------------------------------------------ l=21 a=1 
-----------GGAUACCUGUAUGAAUUGGCGGA------------------------------------------------ l=23 a=1 
---------UGGGAUACCUGUAUGAAUU------------------------------------------------------ l=19 a=1 
---------UGGGAUACCUGUAUGAAUUGGCGGA------------------------------------------------ l=25 a=1 (ma)

mb-01011
ax-1011001
ku-01
ss-100011111000
fn-011
